First record of the non-indigenous Melita nitida Smith, 1873 (Crustacea: Amphipoda: Melitidae) in the Bay of Biscay (NE Atlantic)
The non-native amphipod Melita nitida Smith, 1873 was collected between 2013 and 2016 in Arcachon Bay, Hossegor Lake and the Gironde Estuary (SW France) in intertidal oyster reefs and under stones. This species, native to the Atlantic coast of North America, is considered as a non-indigenous species on the Pacific coast of North America. Recently, the presence of M. nitida was reported in Europe, both in The Netherlands and in Germany. This species may have been accidentally introduced to Arcachon Bay with oyster transfers. An identification key for species belonging to the genus Melita and closely related species in European waters is also provided.
(BioInvasions Records. vol. 5, n° 2242-1300, pp. 85-92, 01/01/2016)
EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS
Using recent high-frequency surveys to reconstitute 35 years of organic carbon variations in a eutrophic lowland river
Concentrations of dissolved and particulate organic carbon (DOC and POC), total suspended solids (TSS), were measured daily, and phytoplankton pigments (chlorophyll-a and pheopigments) were measured every 3 days at three strategic stations along the eutrophic Loire River between November 2011 and November 2013 marked by a high annual and seasonal variability in hydrological regimes. This unique high-frequency dataset allowed to determine the POC origin (autochthonous or allochthonous). Some strong relationships were evidenced between POC, total pigments and TSS and were tested on a long-term database with a lower frequency (monthly data) to reconstitute unmeasured algal and detrital POC concentrations and estimate annual total organic carbon (TOC) fluxes from 1980 onwards. The results were subjected to only ≈25 % uncertainty and showed that the annual TOC fluxes at the outlet of the Loire River decreased from 520 103 tC year−1 (i.e. 4.7 t km−2 year−1) in the early 1990s to 150 103 tC year−1 (i.e. 1.4 t km−2 year−1) in 2012. Although DOC always dominates, the autochthonous POC represented 35 % of the TOC load at the basin outlet by the end of the 1980s and declined to finally represent 15 % only of the TOC. The control of phosphorus direct inputs and the invasion by Corbicula clams spp. which both occurred since the early 1990s probably highly reduced the development of phytoplankton. Consequently, the autochthonous POC contribution declined and TSS concentrations in summertime significantly decreased as well as a result of both less phytoplankton and less calcite precipitation. At the present time, at least 75 % of the POC has allochthonous origins in the upper Middle Loire but downstream, autochthonous POC dominates during summer phytoplanktonic blooms when total pigments concentrations reach up to 70 μg L−1 (equivalent to 75 % of the total POC).
(Environmental Monitoring and Assessment. vol. 188, n° 0167-6369, pp. 41, 01/01/2016)
GéHCO, UT, EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS
Structure of Manila Clam (Ruditapes philippinarum) Microbiota at the Organ Scale in Contrasting Sets of Individuals
Marine invertebrate microbiota has a key function in host physiology and health. To date, knowledge about bivalve microbiota is poorly documented except public health concerns. This study used a molecular approach to characterize the microbiota associated with the bivalve Manila clam (Ruditapes philippinarum) by determining (1) the difference among organs either or not under the influence of host habitat, (2) small-scale variability of microbiota, and (3) the experimental response of the Manila clam microbiota submitted to different lateral transmissions. These questions were investigated by sampling two groups of individuals living in contrasting habitats and carrying out a transplant experiment. Manila clam microbiota (i.e., bacterial community structure) was determined at organ-scale (gills, gut, and a pool of remaining tissues) by capillary electrophoresis DNA fingerprinting (CE fingerprinting). The Manila clam microbiota structure differed among organs indicating a selection of Manila clam microbiota at organ scale. Habitat strongly influenced gill and gut microbiota. In contrast, microbiota associated with remaining tissues was similar between group individuals suggesting that these communities are mostly autochthonous, i.e., Manila clam specific. Transplant experiment showed that improving living condition did not induce any change in microbiota associated with remaining tissues. In contrast, the reduction in individual habitat quality led to individuals in declining health as strongly suggested by the increase in phagocytosis activity and decrease in condition index together with the change in internal organ microbiota. This study provides a first description of the Manila clam holobiont which can withstand disturbance and respond opportunistically to improved environmental conditions.
(Microbial ecology. vol. 71, n° 0095-3628, pp. 194-206, 01/01/2016)
EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS, DFO-MPO, LEMAR, IRD, IFREMER, UBO EPE, CNRS
Danio rerio ABC transporter genes abcb3 and abcb7 play a protecting role against metal contamination
ATP‐binding cassette (ABC) proteins are efflux transporters and some of them are involved in xenobiotic detoxification. The involvement of four zebrafish ABC transporters in cadmium, zinc and mercury detoxification was characterized in a metal hypersensitive mutant of Escherichia coli. The E. coli tolC mutant expressing ABCB3 or ABCB7 transporters exhibited higher survival ratios and lower metal accumulation under a metal exposure condition than the controls. For instance, in the presence of 8 and 10 μM of HgCl2, the survival ratios of bacteria expressing ABCB3 were four and six‐times higher than the control whereas the mercury concentrations were 2.5 and 2‐times lower than in the control. This work provides new data on the function of zebrafish ABCB3 and ABCB7 transporters and highlights their significance in metal detoxification
(Journal of Applied Toxicology. vol. 36, n° 0260-437X, pp. 1551-1557, 01/01/2016)
EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS
Validation and uncertainties evaluation of an isotope dilution-SPE-LC–MS/MS for the quantification of drug residues in surface waters
The present work describes the development and validation of a reference method conducted at the French National Institute of Metrology (LNE) for the quantitative determination of psychoactive compounds in the dissolved fraction of surface waters. More specifically an isotope dilution-SPE-LC-MS/MS based method has been implemented for the characterization of a broad range of analytes belonging to different classes of psychotropic drugs such as benzodiazepines, antidepressants, stimulants, opiates and opioids, anticonvulsants, anti-dementia drugs, analgesics as well as the anti-inflammatory drug diclofenac in the low ng L(-1) range of concentration. Full validation of the method was performed following procedures described by the French standard NF T90-210. Limits of quantification between 0.14 and 3.54 ng L(-1) were obtained. Method recoveries from 71 to 123% were observed with standard deviation below 10% in intermediate precision conditions. Accuracy was determined for every compound: measurement errors were between -4 and +1% and standard deviations in intermediate precision conditions were included within a 1-9% interval. Finally, measurement uncertainties were evaluated following the Guide to the expression of uncertainty in measurement (GUM). Expanded uncertainties (k=2) ranged from 2% for carbamazepine, EDDP (2-ethylidene-1,5-dimethyl-3,3-diphenylpyrrolidine) and venlafaxine to 17% for diazepam. The validated method was implemented to Seine river surface waters demonstrating its fitness for purpose. All compounds were detected and 22 out of 25 analytes were quantified. More specifically, measured concentration ranged from 0.39 ng L(-1) for MDMA (3,4-methylene-dioxy-N-methylamphetamine) to 182 ng L(-1) for gabapentine.
(Talanta. vol. 146, n° 0039-9140, pp. 138-147, 01/01/2016)
EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS
Long-term (1998-2010) large-scale comparison of the ecological quality status of gulf of lions (NW Mediterranean) benthic habitats
A comprehensive Mediterranean data set has been used to address 3 questions associated with the use of sensitivity/tolerance based biotic indices to infer the Ecological Quality status (EcoQs) of benthic habitats. Our results showed: (1) a significant effect of the reference database on derived sensitivity/tolerance measure (ES500.05) as well as associated Benthic Quality Index values and derived EcoQs; (2) a lack of correlation neither between BQI and AZTI Marine Biotic Index values nor between BQI and Multivariate-AZTI Marine Biotic Index values; (3) a lack of correlation between the values of the Benthic Habitat Quality Index (index derived from Sediment Profile Imagery) and those of either of the 3 tested biotic indices; and (4) a general agreement between the 3 tested biotic indices in describing the lack of global trend for the EcoQs of the Gulf of Lions despite the occurrence of significant changes in benthic macrofauna composition between 1998 and 2010. (C) 2015 Elsevier Ltd. All rights reserved.
(Marine Pollution Bulletin. vol. 102, n° 0025-326X, pp. 102--113, 01/01/2016)
EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS, LECOB, OOB, UPMC, CNRS, UPMC, CNRS, CEAB, CSIC, IMBE, AU, AMU, CNRS, DIMAR, CNRS
Differential protein expression in the estuarine copepod Eurytemora affinis after diuron and alkylphenol exposures
Proteomics was used in the calanoid copepod Eurytemora affinis for screening of protein expression modifications induced by organic contaminants. The copepods were exposed in a continuous flow-through system for 86 h to environmentally relevant concentrations of contaminants representative of the pollution in the Seine Estuary (Haute-Normandie, France; diuron, 500 ng L−1; alkylphenol mixture, 1000 ng L−1). Proteome analysis of whole-body copepod extracts by 2-dimensional gel electrophoresis revealed that the contaminants induced modifications in protein expression, with the highest quantitative variations occurring after diuron exposure. Specifically, 88 and 41 proteins were differentially expressed after diuron and alkylphenol treatments, respectively. After mass spectrometry analysis, 51 (diuron exposure) and 15 (alkylphenol exposure) proteins were identified. The identified proteins were potentially related to energy metabolism, cell growth, nervous signal conductivity, excitotoxicity, oxidative stress response, and antioxidant defense. The data suggest a massive general disturbance of physiological functions of E. affinis after diuron exposure, whereas alkylphenols induced an alteration of a few targeted physiological functions. The protein expression signatures identified after contaminant exposure deserve further investigation in terms of the development of novel potential biomarkers for water quality assessment
(Environmental Toxicology and Chemistry. vol. 35, n° 0730-7268, pp. 1860 - 1871, 22/06/2026)
LEMA, ULH, NU, SEBIO, INERIS, URCA, ULH, NU, URCA, CNRS, EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS, LOG, INSU - CNRS, ULCO, CNRS, IRD [Ile-de-France], PBS, UNIROUEN, NU, INSA Rouen Normandie, INSA, NU, INC3M, UNICAEN, NU, ENSICAEN, NU, ULH, NU, UNIROUEN, NU, INSA Rouen Normandie, INSA, NU, INC-CNRS, CNRS, INC-CNRS, CNRS
Réponses adaptatives ou délétères des jeunes stades de l’esturgeon européen Acipenser sturio en conditions multi-stress
L’esturgeon européen Acipenser sturio est un poisson migrateur en danger critique d’extinction dont la dernière population sauvage fréquente l’estuaire de Gironde. Depuis 1994, aucune reproduction en milieu naturel n’a été observée. Un plan national d’action vise à soutenir cette population en déclin par le lâcher chaque année de plusieurs dizaines de milliers de larves et de juvéniles dans les eaux de Garonne et de Dordogne. Dans ce contexte, la survie de ces poissons produits en captivité dans les conditions environnementales actuelles et futures en Gironde. Ainsi que la capacité des frayères historiques à accueillir à nouveau une reproduction d’esturgeon européen, sont deux problématiques essentielles. Pour répondre à ces deux interrogations des expérimentations ont été conduites dans le cadre du projet Sturtop (financement ANR et région Aquitaine) afin d’évaluer les capacités adaptatives des embryons, larves et juvéniles de A. sturio à la température, l’hypoxie, les polluants et la qualité des sédiments de frayère. Les résultats obtenus démontrent que les embryons et larves sont beaucoup plus sensibles aux hautes et basses températures (23°C) et aux conditions hypoxiques (
(pp. 29, 22/06/2026)
EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS, UR EABX, IRSTEA, CNRS, INRA
Impact of organic matter source and quality on living benthic foraminiferal distribution on a river-dominated continental margin: A study of the Portuguese margin
Living (rose Bengal stained) benthic foraminifera were investigated on surface sediments from 23 stations from the river-dominated northwestern Portuguese margin. Samples were collected in March 2011, following the period of the maximum rainfall over the Iberian Peninsula, between 20 and 2000 m water depth along five cross-margin transects. Four of them are located off the Douro, Mondego, Tagus, and Sado Rivers and one off the Estremadura coast. The major objectives of this study are (1) to assess the impact of organic matter of various origin and quality on the benthic foraminifera and (2) to investigate the spatial differences of faunal distribution from coastal waters to the deep sea under river influences. To do this, sedimentological and biogeochemical characteristics of the sediments were identified by measuring grain size, oxygen penetration depth, total organic carbon (TOC) content, stable carbon isotopic composition of TOC (δ13CTOC) and concentration of pigments and amino acids. Based on the principal component and cluster analyses of the environmental data, three major geographical groups are identified: (1) deep stations, (2) coastal and middle slope stations, and (3) shelf stations under river influence. At the deepest stations, species are associated with high organic matter (OM) quantity but low OM quality, where Uvigerina mediterranea, Hoeglundina elegans, and agglutinated species such as Reophax scorpiurus or Bigenerina nodosaria are dominant. All stations off the Sado River, which is the most affected area by the anthropogenic influence, are also characterized by high quantity but low quality of OM with the minimum faunal density and diversity within the study area. Middle slope stations are associated with low OM content and coarse sediments (Q50) with the predominance of N. scaphum. Shallow shelf stations close to the Douro and Tagus River mouths show a dominance of taxa (e.g., Ammonia beccarii, Bulimina aculeata, Eggerelloides scaber, Nonion scaphum, Cancris auriculus, and Quinqueloculina seminula) adapted to environments characterized by high OM quality (high fresh chlorophyll (Chl a/Phaeo)) and available amino acids (enzymatically hydrolyzable amino acid (EHAA)/total enzymatically hydrolyzable amino acid (THAA)). The Biotic and Environmental linking analysis suggests that the benthic foraminiferal distribution is mostly controlled by three environmental parameters, i.e., TOC (quantity), EHAA/THAA (quality), and δ13CTOC (source). Hence, this study clearly highlights that the quantitative and qualitative inputs of OM and its source are the most important factors controlling the living benthic foraminiferal distribution with clear influences between the different rivers. This study also suggests a good tolerance of several species for river discharges where the OM quality is high.
(Journal of Geophysical Research: Biogeosciences. vol. 121, n° 2169-8953, pp. 1689-1714, 22/06/2026)
EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS
The Ponto-Caspian basin as a final trap for southeastern Scandinavian Ice-Sheet meltwater
This paper provides new data on the evolution of the Caspian Sea and Black Sea from the Last Glacial Maximum until ca. 12 cal kyr BP. We present new analyses (clay mineralogy, grain-size, Nd isotopes and pollen) applied to sediments from the river terraces in the lower Volga, from the middle Caspian Sea and from the western part of the Black Sea. The results show that during the last deglaciation, the Ponto-Caspian basin collected meltwater and fine-grained sediment from the southern margin of the Scandinavian Ice Sheet (SIS) via the Dniepr and Volga Rivers. It induced the deposition of characteristic red-brownish/chocolate-coloured illite-rich sediments (Red Layers in the Black Sea and Chocolate Clays in the Caspian Sea) that originated from the Baltic Shield area according to Nd data. This general evolution, common to both seas was nevertheless differentiated over time due to the specificities of their catchment areas and due to the movement of the southern margin of the SIS. Our results indicate that in the eastern part of the East European Plain, the meltwater from the SIS margin supplied the Caspian Sea during the deglaciation until ∼13.8 cal kyr BP, and possibly from the LGM. That led to the Early Khvalynian transgressive stage(s) and Chocolate Clays deposition in the now-emerged northern flat part of the Caspian Sea (river terraces in the modern lower Volga) and in its middle basin. In the western part of the East European Plain, our results confirm the release of meltwater from the SIS margin into the Black Sea that occurred between 17.2 and 15.7 cal kyr BP, as previously proposed. Indeed, recent findings concerning the evolution of the southern margin of the SIS and the Black Sea, show that during the last deglaciation, occurred a westward release of meltwater into the North Atlantic (between ca. 20 and 16.7 cal kyr BP), and a southward one into the Black Sea (between 17.2 and 15.7 cal kyr BP). After the Red Layers/Chocolate Clays deposition in both seas and until 12 cal kyr BP, smectite became the dominant clay mineral. The East European Plain is clearly identified as the source for smectite in the Caspian Sea sediments. In the Black Sea, smectite originated either from the East European Plain or from the Danube River catchment. Previous studies consider smectite as being only of Anatolian origin. However, our results highlight both, the European source for smectite and the impact of this source on the depositional environment of the Black Sea during considered period.
(Quaternary Science Reviews. vol. 148, n° 0277-3791, pp. 29-43 (IF 4,521), 22/06/2026)
GEOPS, UP11, CNRS, EPOC, EPHE, PSL, UB, INSU - CNRS, CNRS, GM, IFREMER, RMCA